Joshua Wiley, Ph.D., is a postdoctoral research fellow in the Centre for Primary Care and Prevention at the Mary MacKillop Institute for Health Research and a senior analyst at Elkhart Group Ltd. Trained as a health psychologist, his research focuses on understanding the complex interplays of psychological, social, and physiological processes as they pertain to psychological and physical health. His passion to integrate across mind and body has lead to involvement in a number of interdisciplinary collaborations with nearly 20 publications including 16 peer reviewed journal articles, two other publications and one book. A defining theme across Joshua's research that merges his substantive and statistical background is taking a systems approach to studying health that acknowledges the unique and interactive effects of behavioral/psychosocial processes along with structural and physiological ones. Joshua is particularly interested in research projects that move beyond testing simple associations to testing more comprehensive models of health as well as research that investigates health trajectories and their predictors.

In statistics and data science, Joshua focuses on biostatistics, and is interested in reproducible research and graphical displays of data and statistical models. Through consulting at Elkhart Group Ltd. and former work at UCLA Statistical Consulting Group, he has supported a wide array of clients ranging from graduate students, to experienced researchers, and biotechnology companies.

Curriculum Vitae


Psychosocial Resources & Coping

I am fascinated by the individual differences in how people react to and cope with stressful events. This has led me to explore the roles of psychosocial resources: psychological and social factors that are innately valuable or that individuals can draw on to promote good mental or physical health. Specific resources I have studied include social support, self-efficacy, and positive outcome expectancies. Given the degree of measurement overlap of many resources, another line of my research has been examining measurement and factor analytic models of constellations of psychosocial resources. In four samples analyzed so far, a two-factor model with a latent psychological and social resource factor has fit well.

Coping strategies people employ in response to stressors also play a role in how well they adjust. Coping is particularly important in the face of major life stressors such as cancer or chronic disease. In collaboration with the UCLA Stanton Stress and Coping lab, I have studied the effects of coping in response to genetic testing, breast cancer diagnosis, and an experimental study of receipt of negative health information.


To understand how psychological and physiological processes interact, I have worked on studies measuring biomarkers such as salivary cortisol and alpha-amylase to assess HPA axis and sympathetic nervous system reactivity to stress, and whether psychosocial resources predict physiological baseline or reactivity to acute stress. I collaborate with researchers at Monash University, Stanford, and the University of Melbourne processes related to sleep, including the roles of cognitive vulnerabilities in self- and actigraphy-assessed sleep, and the effects of variability in sleep.

As the number of biomarkers available has grown, researchers are increasingly faced with how to choose which to collect or if many are collected how to model them. Given my work exploring measurement models of psychosocial resources, I am interested in applying similar approaches to biomarkers. I am particularly interested in practical analytical models researchers can use not only to reduce the number of dimensions of biomarkers for analysis, but also to find theoretically meaningful dimensions. Related questions include how best to utilize repeated measures of biomarkers, issues of non-normality or non-linearity, and adjusting for potential biasing effects of medications and other measurement error.


I actively collaborate on interdisciplinary teams. In the area of health services, I have engaged in research probing the frequency and cost of providing futile care in critical care units. We also investigated predictors of providing care assessed as futile: what characteristics of patients or providers increases the probability that a patient will receive futile care? Do different types of providers such as attending physicians, fellows, and nurses ahve different perceptions of when or for which patients, care is futile?

A separate line of work has involved modeling and understanding psychiatric conditions in children and adolescents. Projects have included scale design and assessment of anxiety in children as well as analysis of behavioral and EEG patterns that are signatures of ADHD. In the ADHD research I am involved in, we have tried to characterize differences in networks between children with and without ADHD, rather than only looking at differences on single measures. Most recently, I am involved in a project pursuing novel, interactive, behavioral measures of ADHD.

Publications Selected Presentations Google Scholar

Peer Reviewed Publications

  1. Wiley, J. F., Gruenewald, T. L., Karlamangla, A., & Seeman, T. E. (in press). Modeling Multisystem Physiological Dysregulation. Psychosomatic Medicine.
  2. Wiley, J. F., Cleary, E. H., Karan, A., & Stanton, A. L. (in press). Disease controllability moderates the effect of coping efficacy on positive affect. Psychology & Health.
  3. Stanton, A. L., Wiley, J. F., Krull, J. L., Crespi, C. M., Hammen, C., Allen, J. J. B., Barron, M. L., Jorge, A., & Weihs, K. L. (in press). Longitudinal study of depressive symptoms, episodes, and trajectories in women recently diagnosed with breast cancer. Breast Cancer Research and Treatment.
  4. Menkin, J. A., Robles, T. F., Wiley, J. F., & Gonzaga, G. C. (in press). Online dating across the lifespan: Users' relationship goals. Psychology and Aging.
  5. Bei, B., Wiley, J. F., Trinder, J. & Manber, R. (in press). Beyond the mean: A systematic review on the correlates of daily intraindividual variability of sleep/wake patterns. Sleep Medicine Reviews. doi: 10.1016/j.smrv.2015.06.003.
  6. Neville, T. H., Wiley, J. F., Curtis, R., Yamamoto, M.. & Wenger, N. S. (2015). Nurse and physician concordance on the perception of inappropriate treatment in critical care: An opportunity for collaboration?. American Journal of Critical Care.
  7. Hale, T. S., Wiley, J. F., Tung, K., Kaminski, O., McGough, J. M., McCracken, J. T., & Loo, S. K. (2015). A parietal biomarker for ADHD liability: As predicted by The Distributed Effects Perspective Model of ADHD. Frontiers in Psychiatry, 6(63), 1-19. doi: 10.3389/fpsyt.2015.00063.
  8. Bei, B., Wiley, J. F., Allen, N., & Trinder, J. (2015). A cognitive vulnerability model of sleep and mood in adolescents under naturalistically restricted and extended sleep opportunities. Sleep, 38(3), 453-461. doi: 10.5665/sleep.4508.
  9. Neville, T. H., Wiley, J. F., Holmboe, E. S., Tseng, C-H, Vespa, P. M., Kleerup, E. C. & Wenger, N. S. (2015). Differences between attendings' and fellows' perceptions of futile treatment in the intensive care unit: Implications for training. Academic Medicine, 90(3), 324-330. doi: 10.1097/ACM.0000000000000617.
  10. Brown, L. A., Wiley, J. F., Wolitzky-Taylor, K., Roy-Byrne, P., Sherbourne, C., Stein, M. B., . . . Craske, M. G. (2014). Changes in self-efficacy and outcome expectancy as predictors of anxiety outcomes from the CALM study. Depression and Anxiety. doi: 10.1002/da.22256.
  11. Ortiz Parada, M., Wiley, J. F., & Chiang, J. J. (2014). How stress gets under the skin o Como el estrés psicológico se mete bajo tu piel. Revista Medica de Chile, 142(6), 767-774.
  12. Hale, T. S., Kane, A. M., Kaminsky, O., Tung, K. L., Wiley, J. F., McGough, J. J., Loo, S. K., & Kaplan, J. T. (2014). Visual Network Asymmetry and Default Mode Network Function in ADHD: An fMRI Study. Frontiers in Psychiatry, 5(81). doi: 10.3389/fpsyt.2014.00081..
  13. Dour, H. J., Wiley, J. F., Roy-Byrne, P., Stein, M. B., Sullivan, G., Sherbourne, C. D., . . . Craske, M. G. (2014). Perceived social support mediates anxiety and depressive symptom changes following primary care intervention. Depression and Anxiety, 31(5), 436-442. doi: 10.1002/da.22216.
  14. Langley, A. K., Falk, A., Peris, T., Wiley, J. F., Kendall, P. C., Ginsburg, G., . . . Piacentini, J. (2014). The Child Anxiety Impact Scale: Examining Parent- and Child-Reported Impairment in Child Anxiety Disorders. Journal of Clinical Child & Adolescent Psychology, 43(4), 579-591. doi: 10.1080/15374416.2013.817311.
  15. Huynh, T. N., Kleerup, E. C., Wiley, J. F., Savitsky, T. D., Guse, D., Garber, B. J., & Wenger, N. S. (2013). The frequency and cost of treatment perceived to be futile in critical care. JAMA Intern Med, 173(20), 1887-1894. doi: 10.1001/jamainternmed.2013.10261.
  16. Wiley, J. F., Laird, K., Beran, T., McCannel, T. A., & Stanton, A. L. (2013). Quality of life and cancer-related needs in patients with choroidal melanoma. British Journal of Ophthalmology, 97(11), 1471 - 1474. doi: 10.1136/bjophthalmol-2013-303635.

Other Publications

  1. Wiley, J. F., & Stanton, A. L. (2016). Cancer and mental Health. In Howard S. Friedman (Editor in Chief) Encyclopedia of Mental Health, 2nd edition, Vol 1, Waltham, MA: Academic Press, 2016, pp. 228-232.
  2. Wiley, J. F., & Pace, L. (2015). Beginning R: An Introduction to Statistical Programming, 2nd edition. Apress. ISBN: 978-1-484203-74-3.
  3. Wiley, J. F. (2014). Growth Curve Analysis and Visualization Using R. Journal of Statistical Software, Book Reviews, 58(2). URL:

Selected Peer Reviewed Symposia & Presentations

  1. Wiley, J. F., Bei, B., Trinder, J., & Manber, R., (2015). Daily sleep variability quantified: A reliable and flexible approach. Oral presentation at the Annual Meeting of the Associated Professional Sleep Societies.
  2. Bei, B., Wiley, J. F., Trinder, J., & Manber, R., (2015). Beyond the mean: A systematic review on the correlates of daily sleep variability. Annual Meeting of the Associated Professional Sleep Societies.
  3. Bei, B., Wiley, J. F., Allen, N., Manber, R., & Trinder, J. (2015). Too long, too short, or too variable? Variability of daily actigraphy sleep, perceived sleep quality, and negative mood in adolescents. Annual Meeting of the Associated Professional Sleep Societies.
  4. Wiley, J. F., Gruenewald, T. L., Karlamangla, A., Stanton, A. L., & Seeman, T. E. (2015). A Constellation of Psychosocial Resources are Associated with Lower Allostatic Load. Oral presentation at the Annual Meeting of the American Psychosomatic Society.
  5. Wiley, J. F., Cleary, L., Karan, A., & Stanton, A. L. (2015). Effects of Approach- and Avoidance-Oriented Coping Depend on Disease Controllability. Annual Meeting of the American Psychosomatic Society.
  6. Herts, K. L., Wiley, J. F., McCannel, T. A., & Stanton, A. L. (2015). A Test of the Impact-Engagement Model of Post-Traumatic Growth in Patients with Ocular Melanoma. Annual Meeting of the Society for Behavioral Medicine.
  7. Bauer, M. R., Hanover, L. N., Wiley, J. F., Weihs, K. L., & Stanton, A. L. (2015). Role of Situational and Dispositional Coping in Physical Health-Related Adjustment to Breast Cancer. Annual Meeting of the Society for Behavioral Medicine.
  8. Bei, B., Wiley, J. F., Allen, N. & Trinder, J. (2014). Testing a cognitive vulnerability model on sleep and mood in adolescents under restricted and extended sleep opportunities. Oral Presentation at the Australaisan Sleep Association.
  9. Neville, T. N., Wiley, J. F., Flitcraft, M., Anderson, B., Yamamoto, M, Curtis, J. R., & Wenger, N. S. (2014). Nurse and physician concordance on whether critical patients are receiving treatment perceived to be futile: Opportunity for collaboration. Poster presentation at the Annual Meeting of the American Society for Bioethics and Humanities.
  10. Dour, H. J., Cohen, Z. D., Mesri, B., Wiley, J. F., Niles, A. N, DeRubeis, R. J., & Craske, M. G. (2014). To ACT or to CBT? Using prediction models to identify which treatment to implement for an anxious patient. Oral presentation at the annual meeting of the Association for Behavioral and Cognitive Therapies, Philadelphia, PA.
  11. Huynh, T. H., Wiley, J. F., Tseng, C-H., Vespa, P. M., Kleerup, E. C. & Wenger, N. S. (2014). Differences between attendings' and fellows' perceptions of inappropriate treatment in the intensive care unit. Oral presentation in the ICU Utilization and Outcomes symposium at the Annual Meeting of the American Thoracic Society. American Journal of Respiratory Critical Care Medicine, 189, pp. A2187.
  12. Wiley, J. F., Gruenewald, T. L. & Seeman, T. E. (2014). Measurement of allostatic load in adults aged 34-84 in the Midlife in the United States Study. Poster presented at the Annual Meeting of the American Psychosomatic Society.
  13. Weihs, K. L., Wiley, J. F. & Stanton, A. L. (2014). Acceptance of Emotions Buffers Chronic Stress and Predicts Decline in Depressive Symptoms after Breast Cancer Diagnosis. Poster presented at the Annual Meeting of the American Psychosomatic Society.
  14. Wiley, J. F., Huynh, T. N., & Wenger, N. S. (2013). Methods for intuitive presentations of hierarchical categorical models: An example predicting futile treatment in critical care. Poster presented at Modern Modeling Methods.
  15. Huynh, T. N., Wiley, J. F., Kleerup, E. C., & Wenger, N. S. (2013). The Frequency and Cost of Futile Treatment in Critical Care. Oral presentation at the Annual Meeting of the American Society for Bioethics and Humanities.
  16. Wiley, J. F., Kane, H. S., Dunkel Schetter, C., & Robles, T. (2013). Social constraint and romantic partner support predict salivary cortisol and alpha-amylase trajectories during an acute social stressor. Poster presented at the Annual Meeting of the Society for Behavioral Medicine.
  17. Wiley, J. F., Laird, K., Beran, T. M., McCannel, T. A., & Stanton, A. L. (2012). Quality of Life and Cancer-Related Needs in Choroidal Melanoma Survivors. Poster presented at the Annual Meeting of the Society for Behavioral Medicine.
  18. Wiley, J. F. (2010). Relations of Personality and Occupation with Alcohol Consumption. Paper presented at the annual UC Riverside Symposium for Undergraduate Research, Scholarship and Creative Activity.

Invited Presentations

  1. Wiley, J. F. (Fall 2013). knitr: Automatically embedding R output in documents. Invited presentation at the Los Angeles R User Group.
  2. Wiley, J. F. (June 2013). Psychometrics: Machine Learning meets Psychology. Invited presentation at the Los Angeles Machine Learning User Group.
  3. Wiley, J. F. (May 2013). Mplus Automation: Dynamic Models & Documents with R. Invited guest lecture at Modern Modeling Methods post conference workshop with Dr. Bengt Muthén.
  4. Wiley, J. F. (2012). An integrative approach to psychosocial resources and health. Presentation at the UCLA Health Psychology Colloquium.
  5. Wiley, J. F. (2012). Creating Plots & Graphs in R. Invited presentation at the UCLA Center for Health Policy Research.

Statistics & Analytics

Measurement Models

Deriving unbiased, reliable measures is a common problem in psychology where core constructs such as depression and personality are unobservable. I integrate psychometrics and item response theory into my work to create latent variables of focal constructs and to explore their accuracy and reliability of these measures. I have used confirmatory factor models to understand the latent factor structure underlying psychosocial resources (Wiley, ..., Stanton, under review) and bi-factor models to separate variability associated with anxiety from multiple reporters (parent and child) in categorical response data. Although most of work employs maximum likelihood methods, I am also interested in Bayesian methods. In one study, I used Bayesian factor analysis to extract multiple draws of factor scores from the posterior distribution of the latent variable to meta-analyze several samples where the latent construct was assumed similar, but the specific indicators varied (Wiley, ..., Stanton, under review). I am also exploring the use of Bayesian factor analysis with strong priors to allow small covariances among residuals. I use a variety of analytical software including the commercial Mplus as well as open source variants such as OpenMx and lavaan. For Bayesian models, I have used both Mplus and coded my own factor models in Stan. I have also written a small number of utility functions related to measurement models such as getting maximum likelihood estimates of descriptive statistics using all available data in the R package semutils available on github, and I am a co-developer of the R package MplusAutomation to link R and Mplus, also available on github. MplusAutomation has been cited by over 15 publications (see list here and is in the top 15% of most downloaded R packages.

Mixed Effects Models

Another focus of my statistics work is on mixed and random effects models (e.g., patients sampled within physicians; longitudinal observational studies). One project I worked on involved observations crossed between patients (repeated measures) and physicians and the outcome was ordinal (Huynh, Kleerup, Wiley, ..., Wenger, 2013). I analyzed the data in a Bayesian framework and presented the average marginal change in the probability of falling into each level of the outcome as an intuitive way for clinicians to understand the results and effect of each variable. To automate generating average marginal predictions following an ordinal, cross-classified Bayesian mixed effects model, I wrote the R package, postMCMCglmm, available on github and presented a poster on the work at Modern Modeling Methods 2013 meeting.

Missing Data

I have expertise using multiple imputation and maximum likelihood approaches to more efficiently use data in the case they are missing completely at random (MCAR) or at least missing at random (MAR). However, in longitudinal studies, attrition is ubiquitous and assuming this is random is often untenable. I have done work using joint models or so-called shared parameter models where the random intercept and slope parameters from a growth model are used as predictors of the probability of still being in the study (Wiley, ..., Stanton, in preparation). I have also used joint models in work with clients where the outcome was one of the decision criteria for whether participants could remain in the study (i.e., non random as participants who worsened too quickly were triaged out of the study).

Intra-individual Variability

I am currently working on developing methods for analyzing and modeling intra-individual variability. I have developed an R, varian, for conducting variability analyis. Currently I am working on extending the software to allow more flexible models, alternative distributions, and to use variability as both a predictor and as an outcome (or both, as in mediation). In collaboration with other researchers, we are also working on publishing a number of empirical papers exploring the effects of variability.

Current and Future Directions

Areas of current interest include models and tests for multilevel mediation. In my work and consultation, I have used a non-parametric two-stage re-sampling bootstrap approach as well as a fully Bayesian model derive confidence intervals around the indirect effect. I have conducted some small simulations examining the properties of two-stage re-sampling for multilevel models and code to make use of multiple processors or clusters to speed non parametric bootstrapping of multilevel models in R. Easy to use, fast, tools for applied research using multilevel mediation models is an active area of interest. I am also interested in techniques to estimate the distribution of indirect effects when one of the pathways is a random effect and in how this information can be presented to be useful to researchers, rather than marginalizing out individual differences.


To get in touch with me about my research or a research collaboration please contact me here. If you have questions about statistical analysis or would like a statistical analyst or consultant on your project, please go to Elkhart Group Ltd.

Copyright © 2009 - 2015 by Joshua Wiley. All rights reserved. Brought to you by Elkhart Group Limited.